Harmonizing Labeling and Analytical Strategies to Obtain Protein Turnover Rates in Intact Adult Animals

Changes in the abundance of individual proteins in the proteome can be elicited by modulation of protein synthesis (the rate of input of newly synthesized proteins into the protein pool) or degradation (the rate of removal of protein molecules from the pool). A full understanding of proteome changes therefore requires a definition of the roles of these two processes in proteostasis, collectively known as protein turnover. Because protein turnover occurs even in the absence of overt changes in pool abundance, turnover measurements necessitate monitoring the flux of stable isotope–labeled precursors through the protein pool such as labeled amino acids or metabolic precursors such as ammonium chloride or heavy water. In cells in culture, the ability to manipulate precursor pools by rapid medium changes is simple, but for more complex systems such as intact animals, the approach becomes more convoluted. Individual methods bring specific complications, and the suitability of different methods has not been comprehensively explored. In this study, we compare the turnover rates of proteins across four mouse tissues, obtained from the same inbred mouse strain maintained under identical husbandry conditions, measured using either [¹³C₆]lysine or [²H₂]O as the labeling precursor. We show that for long-lived proteins, the two approaches yield essentially identical measures of the first-order rate constant for degradation. For short-lived proteins, there is a need to compensate for the slower equilibration of lysine through the precursor pools. We evaluate different approaches to provide that compensation. We conclude that both labels are suitable, but careful determination of precursor enrichment kinetics in amino acid labeling is critical and has a considerable influence on the numerical values of the derived protein turnover rates.     

青藏高原不同海拔高度下全缘叶绿绒蒿叶表皮特征研究

采用胶带粘取叶表皮法,利用光学显微镜观测不同海拔高度下全缘叶绿绒蒿叶片的表皮毛、气孔及表皮细胞结构特征,探讨全缘叶绿绒蒿叶表皮特征与海拔高度的关系。结果表明,随着海拔高度增加,全缘叶绿绒蒿叶片上、下表皮毛密度、气孔密度和表皮细胞密度逐渐增加;气孔器及表皮细胞的长度、宽度和面积逐渐减小;表皮细胞的形态随着海拔升高由无规则形向多边形变化,垂周壁由波状向弓形或平直变化。全缘叶绿绒蒿叶表皮结构在不同海拔高度下表现出的差异,可能是植物长期在高原生态环境下的综合反应,以结构上的变化来适应对高海拔地区的环境特点,为进一步研究高海拔地区植物的适应性提供一定依据。     

基于RAD测序技术的黄绿卷毛菇(Floccularia luteovirens)微卫星引物的开发

黄绿卷毛菇(Floccularia luteovirens)是广泛分布于青藏高原高寒草甸的一种重要的可食用的菌根真菌。先前的研究利用EST-SSR引物已经对该物种的遗传多样性及群落结构进行了研究,但研究表明EST-SSR位点多态性较低,因此想要进一步探讨形成现有遗传分布格局的机制(该物种小尺度空间范围内基株的密度及大小)需要重新开发具有更高多态性的基于核基因的微卫星位点。本研究利用RAD测序技术使用直接测序分析的方法重新开发了12对具有多态性的引物。测序结果去接头拼装后共获得46 036条重叠群。在这些序列当中共扫描到342条含有重复单元的序列,在这当中70.47%为三碱基重复(241),8.19%为二碱基重复(28)。随机选取48对检测,12对具有多态性且测序结果良好,基于3个居群63个个体的遗传多样性研究显示,所有样品中共获得60个单倍型,每个位点的单倍型数量介于2 (GSSR26L)至9 (GSSR7L,GSSR11L)之间。Gst值介于-0.03(GSSR46L)至0.28(GSSR6L)之间、Fst值介于-0.03(GSSR33L)至0.42(GSSR6L)之间。在引物GSSR47L扩增测序中发现,其扩增出的片段不仅具有重复单元数量的变化,重复单元本身也存在突变的现象,这是之前使用聚丙烯凝胶电泳所检测不到的。本研究获得的微卫星引物将为接下来小尺度空间下研究黄绿卷毛菇基株的密度、大小及动态变化提供有力的支持。     

青藏高原两种植被类型净初级生产力与气候因素的关系及周转值分析

基于2008—2016年青海海北站9年净初级生产力及气候因子监测数据,分析了青藏高原高寒小嵩草草甸和高寒金露梅灌丛两种植被净初级生产力年际动态,并探讨了气候因子对其影响及其不同土层深度根系周转值特征。结果表明:(1)年际尺度上,小嵩草草甸地上净初级生产力表现为显著增加趋势,增幅为7.02 g m~(-2) a~(-1),而金露梅灌丛地上净初级生产力相对较为稳定;对于其地下净初级生产力和总生产力,小嵩草草甸和金露梅灌丛均表现为增加趋势(P0.05),9年间小嵩草草甸地上、地下和总净初级生产力平均值分别为(217.55±9.95)、(1882.75±161.33) g m~(-2) a~(-1)和(2100.30±163.38) g m~(-2) a~(-1),金露梅灌丛地上、地下和总净初级生产力9年间平均值分别为(256.27±11.4)、(1614.31±173.03) g m~(-2) a~(-1)和(1870.58±177.93) g m~(-2) a~(-1)。(2)不同植被类型地上净初级生产力对气候因素响应不同,金露梅灌丛地上净初级生产力主要受温度影响,而温度对小嵩草草甸地上净初级生产力无显著影响。此外,降水不是限制高寒生态系统草地地上净初级生产力主要因子,相比于降水影响,高寒生态系统地上净初级生产力更受温度调控。(3)年均温和年降水对金露梅灌丛和小嵩草草甸地下净初级生产力均无显著影响(P0.05),表明高寒生态系统,其地下生产力受外界气候条件变化影响微弱,是一个稳定的碳库。(4)两种植被类型其根系周转值均随着土壤深度的增加呈逐渐增加趋势,且高寒灌丛根系周转值明显高于高寒草甸根系周转值。研究表明,在全球气候变暖背景下将会增加金露梅灌丛地上净初级生产力,而对小嵩草草甸地上净初级生产力无显著影响。     

黄土丘陵区不同土地利用下土壤释放N2O潜力的影响因素

采用室内培养试验,研究了不同水热条件对黄土丘陵区林地、草地和果园土壤释放N2O的影响,同时测定了土壤中不同氮素形态的变化,旨在探讨影响土壤释放N2O潜力的因素。结果表明：土样中N2O通量与温度显著相关（r=0.1599, P<0.05）,均随温度的升高不断增大,35℃时达到最大。N2O通量与土壤水分含量极显著相关（r=0.2499,P<0.0001）,在土壤水分含量较低时,各土样中N2O通量与土壤水分含量呈正相关,土壤水分接近田间持水量时N2O通量最大,超过田间持水量时N2O通量急剧下降。土壤水分和温度对N2O通量的影响可用拟合方程F=a bT cT^2 dT^3 eT^4 fW来描述。在培养条件下,土壤中N2O的释放总量大小依次为：果园土>林地土>草地土,果园土释放N2O的总量分别比林地土和草地土的释放总量多30%,14%。土壤氮素形态与N2O的释放量有一定关系,但规律不明显。     

兔后交叉韧带断裂后外侧胫骨平台退变的组织学研究

目的:探讨兔后交叉韧带(Posterior cruciate ligament,PCL)断裂对外侧胫骨平台组织学的影响。方法:48只家兔膝关节随机配对为实验侧和对照侧造模,造模后第4、8、16、24周各随机处死12只,行外侧胫骨平台大体观察、HE染色、免疫组化检测基质金属蛋白酶13(matrix metalloproteinase-13,MMP-13)、基质金属蛋白酶抑制剂1(Tisse inhibitor-1 of matrix metalloproteinase1,TIMP-1)表达。结果:①大体观察,随时间延长,实验组外侧胫骨平台软骨出现磨损,呈灰黄色,弹性差,骨赘形成。②组织学观察,随时间延长,胫骨平台软骨纤维化,细胞排列紊乱,簇聚细胞出现频率增加。③实验组MMP-13、TIMP-1表达均高于对照组,有显著性差异,P<0.05。④实验组MMP-13、TIMP-1表达阳性率第4、8、16周逐渐升高,24周下降,各组比较有显著性差异,P<0.05。结论:①兔膝关节PCL断裂会引起外侧胫骨平台软骨退行性变,且该退变随着时间的推移逐渐加重。②MMP-13与TIMP-1在PCL断裂膝关节外侧胫骨平台中的表达呈现先高后低的变化规律,造成MMP-13与TIMP-1的失衡,加速软骨退变。③MMP-13与TIMP-1表达增高提示MMP-13与TIMP-1可能参与了PCL断裂后外侧胫骨平台软骨的退变过程。     

羌塘高原藏羚羊栖息地分布及影响因素

藏羚羊作为羌塘高原草食性野生动物的典型代表,明确其栖息地的准确分布将有利于识别藏羚羊种群保护关键区域,协调羌塘高原人与野生动物冲突。采用野外调查与物种分布模型相结合的办法,以藏羚羊栖息地选择偏好和迁徙规律为基础,利用Maxent模型模拟其在繁殖季节和非繁殖季节的栖息地分布,并通过栖息地质量模型辅以GIS空间分析方法,识别受人类干扰的栖息地范围。结果表明：藏羚羊在非繁殖季节主要分布在羌塘高原东南部,围绕在色林错等水系周围,其越冬区面积约为26万km²。倾向选择海拔4800m以上、气候温暖、靠近水源且食物资源丰富的区域。藏羚羊在繁殖季节栖息地明显呈现由南向北扩散的趋势,多在水系周围呈小片状分布于羌塘东北、中北、昆仑山南麓部分区域,产羔区面积约为30万km²。选择产羔地时则注重坡度、水源、海拔、气温日较差等,对植被资源的选择倾向较非繁殖季弱,重视迁徙通道连贯性和产羔区域安全性。羌塘高原人类活动整体较弱,北部羌塘国家级自然保护区是藏羚羊理想栖息地,但南部地区社会经济较发达,尤其是那曲地区南部和阿里西南部,居民地、道路和牧业等人类活动对栖息地干扰较大,受干扰面积分别占藏羚羊越冬区的39.7%,产羔区的34.9%。     

螺旋CT三维重建技术在胫骨平台骨折的诊疗应用分析

目的探讨螺旋CT三维重建在胫骨平台骨折中的临床应用。方法回顾性分析2007-2008年55例胫骨平台骨折病例．手术前均常规行X线摄片,行螺旋CT三维重建并与术中所见对照。结果所有病例螺旋CT三维重建明确地显示了骨折,并在骨折的分型和关节面碎裂情况的描述上较平片优越,与手术中所见一致。结论CT多种成像后处理技术可清晰显示骨折的部位、骨折线的走行方向、骨质碎裂程度和移位的距离以及关节面塌陷情况等,对术前分型、制订手术治疗方案具有重要的参考价值。     

Mesozoic tectono-sedimentary evolution of Rocca Busambra in western Sicily

The Rocca Busambra ridge in western Sicily is a shallow to pelagic Meso-Cenozoic carbonate structural unit of the Sicilian Chain with a variety of tectono-sedimentary features. Palaeofaults, unconformities (buttress unconformity, onlap, downlap), a network of neptunian dykes with several infilling generations, several large hiatuses, different facies and lateral facies changes, and erosional submarine and subaerial surfaces are observed. Detailed fieldwork and structural analyses have indicated the occurrence of fault planes with different orientations. These data, combined with facies studies and physical-stratigraphy analyses, allow for the distinction of different depositional regions. A lateral change from an open-marine carbonate platform with a stepped fault margin (located in the westernmost sector) to a deeper basinal depositional setting in the east, in the context of an upper slope scalloped margin and base-of-slope systems with talus breccias, is envisaged here. Extensional to transtensional tectonic pulses punctuated the sedimentary evolution during Early Toarcian, Late Jurassic, Early Cretaceous, Late Cretaceous, and Early Miocene times. The collected data show that most fault planes have preserved their original orientations throughout the reactivation processes. The reconstructed Meso-Cenozoic tectono-sedimentary evolution is closely related to the late syn-rift and post-rift tectonic evolution of the Tethyan continental margin.     

Hymenobacter tibetensis sp. nov., a UV-resistant bacterium isolated from Qinghai–Tibet plateau

A brick-red-pigmented strain (XTM003^T) isolated from the Qinghai–Tibet plateau was investigated using a polyphasic taxonomy approach. Phylogenetic analyses based on 16S rRNA gene sequence indicated that the organism belonged to the genus Hymenobacter. The predominant menaquinone was MK7. The major fatty acids included iso-15:0, 16:1w5c and summed feature 3 (C_{16: 1}ω7c and/or C_{16: 1}ω6c). The G+C content of the DNA was 55.8%. In addition, DNA–DNA hybridization studies demonstrated that strain XTM003^T had a relatedness value of 50.7% with the phylogenetically most closely related species Hymenobacter norwichensis DSM 15439^T. Based on the results of phenotypic characteristics and DNA–DNA hybridization studies, strain XTM003^T is considered to represent a novel species, for which the name Hymenobacter tibetensis sp. nov. is proposed. The type strain is XTM003^T (=CCTCC AB 207089^T=NRRL B-51271^T).